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 Gastroenterology







Diarrhea slowed down Roman soldiers

Popular Science

Intestinal parasites that still plague us today were all over Roman Britain. Breakthroughs, discoveries, and DIY tips sent every weekday. The soldiers guarding the Roman Empire's northwestern frontier had a real parasite problem. Scientists analyzing the sewer drains from the Roman fort Vindolanda (near Hadrian's Wall in northern England) found three types of intestinal parasites --roundworm,whipworm, and . The findings published in the journal mark the first time that has been documented in Roman Britain.


Transformation of Biological Networks into Images via Semantic Cartography for Visual Interpretation and Scalable Deep Analysis

Mostafa, Sakib, Xing, Lei, Islam, Md. Tauhidul

arXiv.org Artificial Intelligence

Complex biological networks are fundamental to biomedical science, capturing interactions among molecules, cells, genes, and tissues. Deciphering these networks is critical for understanding health and disease, yet their scale and complexity represent a daunting challenge for current computational methods. Traditional biological network analysis methods, including deep learning approaches, while powerful, face inherent challenges such as limited scalability, oversmoothing long-range dependencies, difficulty in multimodal integration, expressivity bounds, and poor interpretability. We present Graph2Image, a framework that transforms large biological networks into sets of two-dimensional images by spatially arranging representative network nodes on a 2D grid. This transformation decouples the nodes as images, enabling the use of convolutional neural networks (CNNs) with global receptive fields and multi-scale pyramids, thus overcoming limitations of existing biological network analysis methods in scalability, memory efficiency, and long-range context capture. Graph2Image also facilitates seamless integration with other imaging and omics modalities and enhances interpretability through direct visualization of node-associated images. When applied to several large-scale biological network datasets, Graph2Image improved classification accuracy by up to 67.2% over existing methods and provided interpretable visualizations that revealed biologically coherent patterns. It also allows analysis of very large biological networks (nodes > 1 billion) on a personal computer. Graph2Image thus provides a scalable, interpretable, and multimodal-ready approach for biological network analysis, offering new opportunities for disease diagnosis and the study of complex biological systems.


Automated Generation of Custom MedDRA Queries Using SafeTerm Medical Map

Vandenhende, Francois, Georgiou, Anna, Georgiou, Michalis, Psaras, Theodoros, Karekla, Ellie, Hadjicosta, Elena

arXiv.org Artificial Intelligence

In pre-market drug safety review, grouping related adverse event terms into standardised MedDRA queries or the FDA Office of New Drugs Custom Medical Queries (OCMQs) is critical for signal detection. We present a novel quantitative artificial intelligence system that understands and processes medical terminology and automatically retrieves relevant MedDRA Preferred Terms (PTs) for a given input query, ranking them by a relevance score using multi-criteria statistical methods. The system (SafeTerm) embeds medical query terms and MedDRA PTs in a multidimensional vector space, then applies cosine similarity and extreme-value clustering to generate a ranked list of PTs. Validation was conducted against the FDA OCMQ v3.0 (104 queries), restricted to valid MedDRA PTs. Precision, recall and F1 were computed across similarity-thresholds. High recall (>95%) is achieved at moderate thresholds. Higher thresholds improve precision (up to 86%). The optimal threshold (~0.70 - 0.75) yielded recall ~50% and precision ~33%. Narrow-term PT subsets performed similarly but required slightly higher similarity thresholds. The SafeTerm AI-driven system provides a viable supplementary method for automated MedDRA query generation. A similarity threshold of ~0.60 is recommended initially, with increased thresholds for refined term selection.


Implicit Hypergraph Neural Network

Choudhuri, Akash, Zhong, Yongjian, Adhikari, Bijaya

arXiv.org Artificial Intelligence

Hypergraphs offer a generalized framework for capturing high-order relationships between entities and have been widely applied in various domains, including healthcare, social networks, and bioinformatics. Hypergraph neural networks, which rely on message-passing between nodes over hyperedges to learn latent representations, have emerged as the method of choice for predictive tasks in many of these domains. These approaches typically perform only a small number of message-passing rounds to learn the representations, which they then utilize for predictions. The small number of message-passing rounds comes at a cost, as the representations only capture local information and forego long-range high-order dependencies. However, as we demonstrate, blindly increasing the message-passing rounds to capture long-range dependency also degrades the performance of hyper-graph neural networks. Recent works have demonstrated that implicit graph neural networks capture long-range dependencies in standard graphs while maintaining performance. Despite their popularity, prior work has not studied long-range dependency issues on hypergraph neural networks. Here, we first demonstrate that existing hypergraph neural networks lose predictive power when aggregating more information to capture long-range dependency. We then propose Implicit Hypergraph Neural Network (IHNN), a novel framework that jointly learns fixed-point representations for both nodes and hyperedges in an end-to-end manner to alleviate this issue. Leveraging implicit differentiation, we introduce a tractable projected gradient descent approach to train the model efficiently. Extensive experiments on real-world hypergraphs for node classification demonstrate that IHNN outperforms the closest prior works in most settings, establishing a new state-of-the-art in hypergraph learning.


DeepGI: Explainable Deep Learning for Gastrointestinal Image Classification

Houmaidi, Walid, Hadadi, Mohamed, Sabiri, Youssef, Chtouki, Yousra

arXiv.org Artificial Intelligence

This paper presents a comprehensive comparative model analysis on a novel gastrointestinal medical imaging dataset, comprised of 4,000 endoscopic images spanning four critical disease classes: Diverticulosis, Neoplasm, Peritonitis, and Ureters. Leveraging state-of-the-art deep learning techniques, the study confronts common endoscopic challenges such as variable lighting, fluctuating camera angles, and frequent imaging artifacts. The best performing models, VGG16 and MobileNetV2, each achieved a test accuracy of 96.5%, while Xception reached 94.24%, establishing robust benchmarks and baselines for automated disease classification. In addition to strong classification performance, the approach includes explainable AI via Grad-CAM visualization, enabling identification of image regions most influential to model predictions and enhancing clinical interpretability. Experimental results demonstrate the potential for robust, accurate, and interpretable medical image analysis even in complex real-world conditions. This work contributes original benchmarks, comparative insights, and visual explanations, advancing the landscape of gastrointestinal computer-aided diagnosis and underscoring the importance of diverse, clinically relevant datasets and model explainability in medical AI research.